Publications

 

A selection of recent BSRC members’ publications are listed below.

De novo assembly of Plasmodium knowlesi genomes from clinical samples explain the counterintuitive intrachromosomal organization of variant SICAvar and kir multiple gene family members
Oresegun, D. R., Thorpe, P., Benavente, E. D., Campino, S., Fauzi, M., Moon, R. W., Clark, T. G. & Cox-Singh, J., 23 May 2022, In: Frontiers in Genetics. 13, 16 p., 855052.
Research output: Contribution to journalArticlepeer-review

A Bayesian network structure learning approach to identify genes associated with stress in spleens of chickens
Videla Rodriguez, E. A., Mitchell, J. B. O. & Smith, V. A., 6 May 2022, In: Scientific Reports. 12, 8 p., 7482.
Research output: Contribution to journalArticlepeer-review

A laser-driven optical atomizer: photothermal generation and transport of zeptoliter-droplets along a carbon nanotube deposited hollow optical fiber
Lee, H., Partanen, M., Lee, M., Jeong, S., Lee, H. J., Kim, K., Ryu, W., Dholakia, K. & Oh, K., 7 Apr 2022, In: Nanoscale. 14, 13, p. 5138-5146 9 p., 14.
Research output: Contribution to journalArticlepeer-review

A low-spin CoII/Nitroxide complex for distance measurements at Q-band frequencies
Giannoulis, A., Cordes, D. B., Slawin, A. M. Z. & Bode, B. E., 11 Apr 2022, In: Magnetochemistry. 8, 4, 43.
Research output: Contribution to journalArticlepeer-review

A novel lipase with dual localisation in Trypanosoma brucei
Monic, S. G., Lamy, A., Thonnus, M., Bizarra-Rebelo, T., Bringaud, F., Smith, T. K., Figueiredo, L. M. & Rivière, L., 19 Mar 2022, In: Scientific Reports. 12, 4766.
Research output: Contribution to journalArticlepeer-review

Active site remodelling of a cyclodipeptide synthase redefines substrate scope
Sutherland, E., Harding, C. J. & Melo Czekster, C., 25 Aug 2022, In: Communications Chemistry. 5, 10 p., 101.
Research output: Contribution to journalArticlepeer-review

Adult Stem Cells Host Intracellular Symbionts: The Poriferan Archetype
Ereskovsky, A., Rinkevich, B. & Somorjai, I. M. L., Feb 2022, Advances in Aquatic Invertebrate Stem Cell Research. : From Basic Research to Innovative Applications. Ballarin, L., Rinkevich, B. & Hobmayer, B. (eds.). MDPI, p. 65-93
Research output: Chapter in Book/Report/Conference proceedingChapter

Albumin-mediated extracellular zinc speciation drives cellular zinc uptake
Coverdale, J. P. C., van den Berg, H. A., Khazaipoul, S., Bridgewater, H. E., Stewart, A. J. & Blindauer, C. A., 7 Jul 2022, In: Chemical Communications. 58, 53, p. 7384-7387 4 p.
Research output: Contribution to journalArticlepeer-review

All-optical sub-Kelvin sympathetic cooling of a levitated microsphere in vacuum
Arita, Y., Bruce, G. D., Wright, E. M., Simpson, S. H., Zemánek, P. & Dholakia, K., 20 Sep 2022, In: Optica. 9, 9, p. 1000-1002
Research output: Contribution to journalArticlepeer-review

Allelic variants of a potato HEAT SHOCK COGNATE 70 gene confer improved tuber yield under a wide range of environmental conditions
Campbell, R., Ducreux, L., Cowan, G., Young, V., Chinoko, G., Chitedze, G., Kwendani, S., Chiipanthenga, M., Bita, C. E., Mwenye, O., Were, H., Torrance, L., Sharma, S. K., Hancock, R. D., Bryan, G. J. & Taylor, M., 15 Mar 2022, (E-pub ahead of print) In: Food and Energy Security. Early View, 14 p., e377.
Research output: Contribution to journalArticlepeer-review

Allosteric inhibition of Acinetobacter baumannii ATP phosphoribosyltransferase by protein:dipeptide and protein:protein Interactions
Read, B. J., Fisher, G., Wissett, O. L. R., Machado, T. F. G., Nicholson, J., Mitchell, J. B. O. & da Silva, R. G., 14 Jan 2022, In: ACS Infectious Diseases. 8, 1, p. 197-209 13 p.
Research output: Contribution to journalArticlepeer-review

Asymmetric longitudinal optical binding force between two identical dielectric particles with electric and magnetic dipolar responses
Duan, X-Y., Bruce, G. D., Li, F. & Dholakia, K., Jul 2022, In: Physical Review A. 106, 1, 10 p., 013108 .
Research output: Contribution to journalArticlepeer-review

Changes in plasma free fatty acids in obese patients before and after bariatric surgery highlight alterations in lipid metabolism
Hierons, S. J., Abbas, K., Sobczak, A. I. S., Cerone, M., Smith, T. K., Ajjan, R. A. & Stewart, A. J., 12 Sep 2022, In: Scientific Reports. 12, 10 p., 15337.
Research output: Contribution to journalArticlepeer-review

Combined pulsed electron double resonance EPR and molecular dynamics investigations of calmodulin suggest effects of crowding agents on protein structures
Stewart, A. M., Shanmugam, M., Kutta, R. J., Scrutton, N. S., Lovett, J. E. & Hay, S., 18 Aug 2022, (E-pub ahead of print) In: Biochemistry. Articles ASAP, 8 p.
Research output: Contribution to journalArticlepeer-review

Computational insights into the catalytic mechanism of Is-PETase: an enzyme capable of degrading poly(ethylene) terephthalate
Shrimpton-Phoenix, E., Mitchell, J. B. O. & Buehl, M., 15 Sep 2022, (Accepted/In press) In: Chemistry - A European Journal. In press
Research output: Contribution to journalArticlepeer-review

Condensation properties of stress granules and processing bodies are compromised in myotonic dystrophy type 1
Gulyurtlu, S., Magon, M. S., Guest, P. N., Papavasiliou, P. P., Morrison, K., Prescott, A. & Sleeman, J. E., 2 Aug 2022, In: Disease Models & Mechanisms. 15, 7, dmm049294.
Research output: Contribution to journalArticlepeer-review

Conformational rearrangements regulating the DNA repair protein APE1
Komaniecka, N., Porras, M., Cairn, L., Santas, J. A., Ferreiro, N., Penedo, C. & Banuelos, S., 20 Jul 2022, In: International Journal of Molecular Sciences. 23, 14, 14 p., 8015.
Research output: Contribution to journalArticlepeer-review

Convenient synthesis of alternatively bridged tryptophan ketopiperazines and their activities against trypanosomatid parasites
Cockram, P. E., Turner, C., Slawin, A. M. Z. & Smith, T., 5 Jan 2022, (E-pub ahead of print) In: ChemMedChem. Early View, 12 p., e202100664.
Research output: Contribution to journalArticlepeer-review

Cyclic nucleotide signaling in phage defense and counter-defense
Athukoralage, J. S. & White, M. F., Sep 2022, In: Annual Review of Virology. 9, 18 p.
Research output: Contribution to journalArticlepeer-review

Cyclic nucleotide-induced helical structure activates a TIR immune effector
Hogrel, G., Guild, A., Graham, S., Rickman, H., Grüschow, S., Bertrand, Q., Spagnolo, L. & White, M. F., 25 Aug 2022, In: Nature. 608, 7924, p. 808–812
Research output: Contribution to journalArticlepeer-review

DEER data analysis software: a comparative guide
Russell, H., Cura, R. & Lovett, J. E., 1 Jun 2022, In: Frontiers in Molecular Biosciences. 9, 17 p., 915167.
Research output: Contribution to journalArticlepeer-review

Degree correlations in graphs with clique clustering
Mann, P. S., Smith, V. A., Mitchell, J. B. O. & Dobson, S. A., 30 Apr 2022, In: Physical Review. E, Statistical, nonlinear, and soft matter physics. 105, 4, 14 p., 044314.
Research output: Contribution to journalArticlepeer-review

Desaturases: structural and mechanistic insights into the biosynthesis of unsaturated fatty acids
Cerone, M. & Smith, T. K., 18 Sep 2022, (E-pub ahead of print) In: IUBMB Life. Early View, 16 p.
Research output: Contribution to journalReview articlepeer-review

Detection and quantification of viable Mycobacterium tuberculosis bacilli in saline-processed stool samples by Tuberculosis Molecular Bacterial Load Assay: a potential alternative for processing stool
Musisi, E., Ssesolo, A., Sloan, D. J., Gillespie, S. H. & Sabiiti, W., 12 May 2022, In: Microbiology Spectrum. 10, 3, 3 p., 00274-22.
Research output: Contribution to journalLetterpeer-review

Efficient anisotropic polariton lasing using molecular conformation and orientation in organic microcavities
Le Roux, F., Mischok, A., Bradley, D. D. C. & Gather, M. C., 18 Sep 2022, (E-pub ahead of print) In: Advanced Functional Materials. Early View, 10 p., 202209241.
Research output: Contribution to journalArticlepeer-review

Emergence of methicillin resistance predates the clinical use of antibiotics
Larsen, J., Raisen, C. L., Ba, X., Sadgrove, N. J., Padilla-González, G. F., Simmonds, M. S. J., Loncaric, I., Kerschner, H., Apfalter, P., Hartl, R., Deplano, A., Vandendriessche, S., Černá Bolfíková, B., Hulva, P., Arendrup, M. C., Hare, R. K., Barnadas, C., Stegger, M., Sieber, R. N., Skov, R. L., Petersen, A., Angen, Ø., Rasmussen, S. L., Espinosa-Gongora, C., Aarestrup, F. M., Lindholm, L. J., Nykäsenoja, S. M., Laurent, F., Becker, K., Walther, B., Kehrenberg, C., Cuny, C., Layer, F., Werner, G., Witte, W., Stamm, I., Moroni, P., Jørgensen, H. J., de Lencastre, H., Cercenado, E., García-Garrote, F., Börjesson, S., Hæggman, S., Perreten, V., Teale, C. J., Waller, A. S., Pichon, B., Curran, M. D., Ellington, M. J., Welch, J. J., Peacock, S. J., Seilly, D. J., Morgan, F. J. E., Parkhill, J., Hadjirin, N. F., Lindsay, J. A., Holden, M. T. G., Edwards, G. F., Foster, G., Paterson, G. K., Didelot, X., Holmes, M. A., Harrison, E. M. & Larsen, A. R., 3 Feb 2022, In: Nature. 602, 7895, p. 135-141 7 p.
Research output: Contribution to journalArticlepeer-review

Enhanced oxygen redox reversibility and capacity retention of titanium-substituted Na4/7[□1/7Ti1/7Mn5/7]O2 in sodium-ion batteries
Linnell, S., Kim, E. J., Choi, Y-S., Hirsbrunner, M., Imada, S., Pramanik, A., Fuente Cuesta, A., Miller, D., Fusco, E., Bode, B. E., Irvine, J., Duda, L., Scanlon, D. O. & Armstrong, A. R., 14 May 2022, In: Journal of Materials Chemistry A. 10, 18, p. 9941-9953
Research output: Contribution to journalArticlepeer-review

Exploring ICP-MS as a versatile technique: from imaging to chemical speciation analysis
Amais, R. S., de Andrade, A. M., Santos da Silva, A. B., Freitas, D. C., Francischini, D. D. S., Stewart, A. J. & Arruda, M. A. Z., 24 May 2022, ICP-MS and trace element analysis as tools for better understanding medical conditions. Elsevier, Vol. 97. p. 141-177 37 p. (Comprehensive Analytical Chemistry).
Research output: Chapter in Book/Report/Conference proceedingChapter

Fabrication on the microscale: a two-photon polymerized device for oocyte microinjection
Yagoub, S. H., Thompson, J. G., Orth, A., Dholakia, K., Gibson, B. C. & Dunning, K. R., 12 May 2022, In: Journal of Assisted Reproduction and Genetics. First Online, 11 p.
Research output: Contribution to journalArticlepeer-review

Far-UVC (222 nm) efficiently inactivated an airborne pathogen in a room-sized chamber
Eadie, E., Hiwar, W., Fletcher, L., Tidswell, E., O'Mahoney, P., Buonanno, M., Welch, D., Adamson, C. S., Brenner, D. J., Noakes, C. & Wood, K., 23 Mar 2022, In: Scientific Reports. 12, 4373.
Research output: Contribution to journalArticlepeer-review

From biomass to the karrikins via selective catalytic oxidation of hemicellulose-derived butyl xylosides and glucosides
Xiao, G., Su, G., Slawin, A. M. Z. & Westwood, N. J., 13 Apr 2022, In: European Journal of Organic Chemistry. 2022, 15, e202101308.
Research output: Contribution to journalArticlepeer-review

Generated randomly and selected functionally? The nature of enterovirus recombination
Alnaji, F. G., Bentley, K., Pearson, A., Woodman, A., Moore, J., Fox, H., MacAdam, A. & Evans, D. J., 28 Apr 2022, In: Viruses. 14, 5, 916.
Research output: Contribution to journalArticlepeer-review

Genome-wide analyses of individual differences in quantitatively assessed reading- and language-related skills in up to 34,000 people
Eising, E., Mirza-Schreiber, N., de Zeeuw, E. L., Wang, C. A., Truong, D. T., Allegrini, A. G., Shapland, C. Y., Zhu, G., Wigg, K. G., Gerritse, M., Molz, B., Alagöz, G., Gialluisi, A., Abbondanza, F., Rimfeld, K., van Donkelaar, M., Liao, Z., Jansen, P. R., Andlauer, T. F. M., Bates, T. C., Bernard, M., Blokland, K., Bonte, M., Børglum, A. D., Bourgeron, T., Brandeis, D., Ceroni, F., Csépe, V., Dale, P. S., de Jong, P. F., DeFries, J. C., Démonet, J-F., Demontis, D., Feng, Y., Gordon, S. D., Guger, S. L., Hayiou-Thomas, M. E., Hernández-Cabrera, J. A., Hottenga, J-J., Hulme, C., Kere, J., Kerr, E. N., Koomar, T., Landerl, K., Leonard, G., Lovett, M. W., Lyytinen, H., Martin, N. G., Martinelli, A., Maurer, U., Michaelson, J., Moll, K., Monaco, A. P., Morgan, A. T., Nőthen, M. M., Pausova, Z., Pennell, C. E., Pennington, B. F., Price, K. M., Rajagopal, V. M., Ramus, F., Richer, L., Simpson, N. H., Smith, S., Snowling, M. J., Stein, J., Strug, L. J., Talcott, J. B., Tiemeier, H., van der Schroeff, M. M. P., Verhoef, E., Watkins, K. E., Wilkinson, M., Wright, M. J., Barr, C. L., Boomsma, D. I., Carreiras, M., Franken, M-C. J., Gruen, J. R., Luciano, M., Müller-Myhsok, B., Newbury, D. F., Olson, R. ., Paracchini, S., Paus, T., Plomin, R., Reilly, S., Schulte-Körne, G., Tomblin, B., van Bergen, E., Whitehouse, A. J. O., Willcutt, E. G., St Pourcain, B., Francks, C. & Fisher, S. E., 23 Aug 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 35, 12 p., e2202764119.
Research output: Contribution to journalArticlepeer-review

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning
Nickbakhsh, S., Hughes, J., Christofidis, N., Griffiths, E., Shaaban, S., Enright, J., Smollett, K., Nomikou, K., Palmalux, N., Tong, L., Carmichael, S., Sreenu, V. B., Orton, R., Goldstein, E. J., Tomb, R. M., The COVID-19 Genomics UK (COG-UK) Consortium, Templeton, K., Gunson, R. N., da Silva Filipe, A., Milosevic, C., Thomson, E., Robertson, D. L., Holden, M., Illingworth, C. J. R. & Smith-Palmer, A., 19 Jul 2022, In: Scientific Reports. 12, 17 p., 11735.
Research output: Contribution to journalArticlepeer-review

Genomic surveillance of Salmonella spp. in the Philippines during 2013-2014
Lagrada, M. L., Argimón, S., Borlasa, J. B., Abad, J. P., Gayeta, J. M., Masim, M. L., Olorosa, A. M., Cohen, V., Jeffrey, B., Abudahab, K., Sia, S. B., Hufano, C. M., Stelling, J., Holden, M. T. G., Aanensen, D. M. & Carlos, C. C., 23 Aug 2022, (E-pub ahead of print) In: Transactions of the Royal Society of Tropical Medicine and Hygiene. 12 p., trac080.
Research output: Contribution to journalArticlepeer-review

Data from
The University of St Andrews
Research Portal
.